Species Names in the PhyloCode: the approach adopted by the International Society for Phylogenetic Nomenclature.
نویسندگان
چکیده
Edwards, S. V., L. Liu, and D. K. Pearl. 2007. High resolution species trees without concatenation. Proc. Natl. Acad. Sci. USA 104:5936– 5941. Hennig, W. 1950. Grundzüge Einer Theorie der Phylogenetischen Systematik. Deutscher Zentralverlag, Berlin. [Published in English translation in 1966: Phylogenetic systematics, University of Illinois Press, Urbana, Illinois.] Hudson, R. R. 1983. Testing the constant-rate neutral allele model with protein sequence data. Evolution 37:203–217. Liu, L., and D. K. Pearl. 2007. Species trees from gene trees: Reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Syst. Biol. 56:504–514. Maddison, W. P. 1997. Gene trees in species trees. Syst. Biol. 46:523– 536. Maddison, W. P., and L. L. Knowles. 2006. Inferring phylogeny despite incomplete lineage sorting. Syst. Biol. 55:21–30. Nei, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York. Neigel, J. E. and J. C. Avise. 1986. Phylogenetic relationships of mitochondrial DNA under various demographic models of speciation. Pages 515–534 in Evolutionary processes and theory (S. Karlin and E. Nevo, eds.). Academic Press, Orlando, Florida. Nichols, R. 2001. Gene trees and species trees are not the same. Trends Ecol. Evol. 16:358–364.
منابع مشابه
Phylogenetic definitions in the pre-PhyloCode era; implications for naming clades under the PhyloCode
The last twenty years of work on phylogenetic nomenclature have given rise to many names and definitions that are now considered suboptimal. in formulating permanent definitions under the PhyloCode when it is implemented, it will be necessary to evaluate the corpus of existing names and make judgements about which to establish and which to discard. This is not straightforward, because early def...
متن کاملA Formal Analysis of Phylogenetic Definitions in the PhyloCode
Three main codes currently govern biological nomenclature: (i) The International Code of Botanical Nomenclature (ICBN), (ii) The International Code of Zoological Nomenclature (ICZN), and (iii) The International Code of Nomenclature of Bacteria (ICNB). Recently, the PhyloCode – a code based on phylogenetic nomenclature, has been presented as an alternative. To facilitate a comparison between the...
متن کاملMeaning of the name tetrapoda in the scientific literature: an exchange.
This exchange stems from an on-going debate between advocates of crown clade (e.g., Gauthier et al., 1988; Rowe, 1988; Laurin, 1998) and those of apomorphybased (e.g., Ahlberg and Clack, 1998; Lee, 1999; Padian et al., 1999; Anderson, 2001) definitions of widely used taxon names (see Table 1 for a glossary of terms). Both types of definitions have advantages: apomorphy-based definitions usually...
متن کاملSpecies and phylogenetic nomenclature
The imminent introduction of the draft PhyloCode (Cantino & de Queiroz, 2000) governing application of phylogenetic nomenclature (de Queiroz & Gauthier, 1990, 1992) has generated considerable discussion in this journal and elsewhere. Some contentious issues include the information content of Linnaean ranks, stability in meaning and content of taxon names, relative merits of node-, stemand apomo...
متن کاملPhylogenetic nomenclature, hierarchical information, and testability.
In a continuing debate about the usefulness of phylogenetic nomenclature, Platnick (2012) has apparently conceded the two main points of our previous paper (de Queiroz and Donoghue 2011) by providing no counter-arguments. First, contrary to Platnick’s previous assertions, when appropriate comparisons are made (i.e., between taxonomies consisting of the same-named groups), there are no differenc...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Systematic biology
دوره 57 3 شماره
صفحات -
تاریخ انتشار 2008